Package: DGEobj 1.1.2

DGEobj: Differential Gene Expression (DGE) Analysis Results Data Object

Provides a flexible container to manage and annotate Differential Gene Expression (DGE) analysis results (Smythe et. al (2015) <doi:10.1093/nar/gkv007>). The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows by m-samples dimensions) and metadata (not keyed to row, col, or assays). A set of accessory functions to deposit, query and retrieve subsets of a data workflow has been provided. Attributes are used to capture metadata such as species and gene model, including reproducibility information such that a 3rd party can access a DGEobj history to see how each data object was created or modified. Since the DGEobj is customizable and extensible it is not limited to RNA-seq analysis types of workflows -- it can accommodate nearly any data analysis workflow that starts from a matrix of assays (rows) by samples (columns).

Authors:John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut]

DGEobj_1.1.2.tar.gz
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DGEobj.pdf |DGEobj.html✨
DGEobj/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/cb4ds/dgeobj/issues

On CRAN:

20 exports 2 stars 1.48 score 9 dependencies 2 dependents 33 scripts 387 downloads

Last updated 2 years agofrom:9aa6c45c20. Checks:OK: 7. Indexed: yes.

Exports:addItemaddItemsannotateDGEobjbaseTypebaseTypesgetAttributesgetBaseTypegetItemgetItemsgetTypeinitDGEobjinitDGEobjDefinventorynewTyperesetDGEobjrmItemsetAttributesshowAttributesshowMetashowTypes

Dependencies:assertthatcligluelifecyclemagrittrrlangstringistringrvctrs