Package: DGEobj.utils 1.0.6

DGEobj.utils: Differential Gene Expression (DGE) Analysis Utility Toolkit

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.

Authors:John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut]

DGEobj.utils_1.0.6.tar.gz
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DGEobj.utils.pdf |DGEobj.utils.html✨
DGEobj.utils/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/cb4ds/dgeobj.utils/issues

On CRAN:

15 exports 2 stars 1.19 score 20 dependencies 1 dependents 28 scripts 367 downloads

Last updated 2 years agofrom:5ddde6ff86. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:convertCountsextractCollowIntFilterrsqCalcrunContrastsrunEdgeRNormrunIHWrunPowerrunQvaluerunSVArunVoomsummarizeSigCountstopTable.mergetpm.directtpm.on.subset

Dependencies:assertthatcliDGEobjdplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangstringistringrtibbletidyselectutf8vctrswithr